I put this in a general feedback post with a bunch of other stuff but thought it would serve best as a separate bug report.
When opening the map (M) and selecting one of the quests for the MoF on the left it opens up the map for the Ancient Era. The quest indicator (?) is tied to the Ancient Era also so I think these are tied together causing this issue. When selecting the quest it should open up in the End of Time map instead.
MoF Map Indicator