Controller Input Not Working

When booting up the game my controller will not function. (8BitDo Ultimate 2) In order to get it to work I have to turn on Steam Input, which ignores menus and continues to interact with the game while a menu is open. Turning it back off my controller will now work just fine. I have to turn on and off Steam Input every time I boot up the game now. This was not an issue pre-season 3.
Player.log (322.8 KB)